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A geostatistical method for assessing biomass of tuna aggregations around moored fish aggregating devices with star acoustic surveys ArchiMer
Doray, Mathieu; Petitgas, Pierre; Josse, E.
Universal kriging was used to model the spatio-temporal variability in the acoustic density of tuna aggregations recorded during star echosounding surveys around moored fish aggregating devices (FADs) in Martinique (Lesser Antilles). The large-scale deterministic drift in the tuna spatial distribution was modeled using an advection-diffusion equation applied to animal grouping. Residuals from the drift were modeled as a random component with small-scale spatial correlation. An estimation variance formula was derived from this deterministic-statistical mixed model to assess the mean precision of density estimates of daytime tuna aggregation. The mean relative error obtained with our star design for daytime surveys was 24%. The methodology was applied to...
Tipo: Text Palavras-chave: Acoustic survey precision; Advection diffusion model; Moored fish aggregating devices; Tuna; Geostatistics.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4559.pdf
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Acoustic characterisation of pelagic fish aggregations around moored fish aggregating devices in Martinique (Lesser Antilles) ArchiMer
Doray, Mathieu; Josse, Erwan; Gervain, Paul; Reynal, Lionel; Chantrel, Josselin.
Sea cruises were conducted for 57 days over 16 months to characterise pelagic fish aggregations around 2 moored fish aggregating devices (FADs) in Martinique (Lesser Antilles). Echosounder surveys run in a star pattern were used in conjunction with obliquely beamed sonar observations. An echo-integration-by-shoal algorithm was implemented to isolate pelagic fish shoals from sound scattering layers and to compute mean morphometric, positional and density parameters. Tree regressions were used to select and classify pelagic fish Target Strengths (TS), with reference to their spatial and temporal characteristics. The main type of pelagic fish aggregation was a large sub-surface aggregation. It was observed during all daytime periods within a radius of 400 m...
Tipo: Text Palavras-chave: Lesser Antilles; Tuna; Large pelagic fish; Aggregative behaviour; Shoal density; Target Strength; Acoustics; Fish Aggregating Device.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1734.pdf
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Biometric relationships and fattning rate of bluefin tuna "Thunnus thynnus thynnus" L. 1758 in Tunisian fish farm OceanDocs
Hattour, A.; Moussa, A..
An analysis of data from a Tunisian farm during the months of June to November of the year 2008 is presented. These data were broken down into two sets the first concern sampled fish while towing them to farm (wild set), the second set concern sampled specimen at the end of fattening process (fattening set). The wild group comprised specimens ranging from 90 to 276 cm fork length, and the fattened group included specimens from 105 to 310 сm. Juvenile proportion (Lf<130 сm) in fattened specimen (15.7%) was considerably smaller compared to the proportion in wild specimens (61,8%). The distribution of individual weights of slaughtered BFT shows the prevalence 31-50 kg specimen class (60.4%). The L-W relationships were determined for each of these sets....
Tipo: Journal Contribution Palavras-chave: Thunnus thynnus; Tuna fisheries; Length-weight relationships; Fish farms; Tuna; Fattening.
Ano: 2012 URL: http://hdl.handle.net/1834/5315
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Characterization of the spoilage potential of pure and mixed cultures of bacterial species isolated from tropical yellowfin tuna ( Thunnus albacares ) ArchiMer
Silbande, A.; Cornet, Josiane; Cardinal, Mireille; Chevalier, Frederique; Rochefort, K.; Smith-ravin, J.; Adenet, S.; Leroi, Francoise.
Aim The spoilage potential of 28 bacterial strains isolated from spoiled raw yellowfin tuna was evaluated. Methods and Results Bacterial species were inoculated in irradiated tuna matrix. Chemical changes, bacterial growth and sensory quality were monitored during aerobic storage at 8°C. Pseudomonas spp., Enterobacter spp. and Escherichia hermanii had no spoiling effect. Brochothrix thermosphacta and Carnobacterium divergens/maltaromaticum developed moderate unpleasant odors. Hafnia paralvei and Serratia spp. released strong off-odors (pyrrolidine, sulfur/cabbage). No bacterial group (except H. paralvei) combined with Pseudomonas spp. deteriorated the sensory quality of tuna. When C. divergens/maltaromaticum was associated with H. paralvei or B....
Tipo: Text Palavras-chave: Bacterial interactions; Bacterial species; Fish; Pseudomonas; Sensory quality; Spoilage potential; Tropical; Tuna.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00414/52557/53395.pdf
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Defining the stock structures of key commercial tunas in the Pacific Ocean II: Sampling considerations and future directions ArchiMer
Moore, Bradley R.; Adams, Tim; Allain, Valerie; Bell, Johann D.; Bigler, Mark; Bromhead, Don; Clark, Sangaa; Davies, Campbell; Evans, Karen; Faasili, Ueta; Farley, Jessica; Fitchett, Mark; Grewe, Peter M.; Hampton, John; Hyde, John; Leroy, Bruno; Lewis, Antony; Lorrain, Anne; Macdonald, Jed I.; Marie, Amandine D.; Minte-vera, Carolina; Natasha, Janice; Nicol, Simon; Obregon, Pablo; Peatman, Thomas; Pecoraro, Carlo; Phillip, N. Bradley; Pilling, Graham M.; Rico, Ciro; Sanchez, Caroline; Scott, Robert; Scutt Phillips, Joe; Stockwell, Brian; Tremblay-boyer, Laura; Usu, Thomas; Williams, Ashley J.; Smith, Niamh.
Delineating the stock structure of highly-mobile, wide-ranging fishes subject to exploitation is a challenging task, yet one that is fundamental to optimal fisheries management. A case in point are stocks of skipjack tuna (Katsuwonus pelamis), yellowfin tuna (Thunnus albacares), bigeye tuna (Thunnus obesus) and albacore tuna (Thunnus alalunga) in the Pacific Ocean, which support important commercial, artisanal, subsistence, and recreational fisheries, and contribute roughly 70 % of global commercial tuna catches. Although some spatial and temporal structuring is recognised within these stocks, growing evidence from a range of approaches suggests that the stock structure of each tuna species is more complex than is currently assumed in both stock assessment...
Tipo: Text Palavras-chave: Tuna; Pacific Ocean; Movement; Spatial dynamics; Stock structure; Fisheries management.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00630/74168/73773.pdf
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Development of a qPCR Method for the Identification and Quantification of Two Closely Related Tuna Species, Bigeye Tuna ( Thunnus obesus ) and Yellowfin Tuna ( Thunnus albacares ), in Canned Tuna ArchiMer
Bojolly, Daline; Doyen, Perine; Le Fur, Bruno; Christaki, Urania; Verrez-bagnis, Veronique; Grard, Thierry.
Bigeye tuna (Thunnus obesus) and yellowfin tuna (Thunnus albacares) are among the most widely used tuna species for canning purposes. Not only substitution but also mixing of tuna species is prohibited by the European regulation for canned tuna products. However, as juveniles of bigeye and yellowfin tunas are very difficult to distinguish, unintentional substitutions may occur during the canning process. In this study, two mitochondrial markers from NADH dehydrogenase subunit 2 and cytochrome c oxidase subunit II genes were used to identify bigeye tuna and yellowfin tuna, respectively, utilizing TaqMan qPCR methodology. Two different qPCR-based methods were developed to quantify the percentage of flesh of each species used for can processing. The first one...
Tipo: Text Palavras-chave: Tuna; Authentication; Quantification; Canned products; TaqMan; QPCR; Species identification; Bigeye tuna (Thunnus obesus); Yellowfin tuna (Thunnus albacares).
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00371/48217/48403.pdf
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Development of a real-time PCR method coupled with a selective pre-enrichment step for quantification of Morganella morganii and Morganella psychrotolerans in fish products ArchiMer
Podeur, Gaetan; Dalgaard, Paw; Leroi, Francoise; Prevost, Herve; Ernborg, Jette; Martinussen, Jan; Hansen, Lars Hestbjerg; Filet, Marie-france.
Histamine fish poisoning is common and due to toxic concentrations of histamine often produced by Gram-negative bacteria in fin-fish products with a high content of the free amino acid histidine. The genus Morganella includes two species previously reported to cause incidents of histamine fish poisoning. Morganella morganii and Morganella psychrotolerans are both strong producer of histamine. However, little is known about the occurrence and critical stages for fish contamination with these bacteria. To elucidate contamination routes of Morganella, specific real-time quantitative PCR (RTi qPCR) methods for quantification of M. morganii and M. psychrotolerans have been developed. Selective primers amplified a 110 bp region of the vasD gene for M....
Tipo: Text Palavras-chave: Histamine-producing bacteria; Tuna; Selective medium; Enterobacteriaceae; Galactokinase; Type VI secretion system.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00254/36551/35096.pdf
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Dosage rapide de l'histamine dans le thon : mise au point, optimisation, applications ArchiMer
Bregeon, Nelly.
After a bibliographic analysis about histamine in tuna and thanks to a high matematical process - the experimental design method - the author has adjusted a quick proportioning method for histamine. The enzymatic technique used in this case requires a microplates reader. It was afterwards valided by comparison with HPLC methode consideres as reference.
Tipo: Text Palavras-chave: Thon Histamine; Plans cxperimentaux; Dosage enzymatiquc; Colorimetre; Test rapide; Tuna; Histamine; Experimental design method; Enzymatic analysis; Spectrophotometry; Quick test.
Ano: 1992 URL: https://archimer.ifremer.fr/doc/00464/57524/59714.pdf
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Effect of diets containing tuna head hydrolysates on the survival and growth of shrimp Penaeus vannamei ArchiMer
Nguyen, Thi-my-huong; Perez-galvez, Raul; Berge, Jean-pascal.
A feeding trial was conducted to evaluate the effect of the supplementation of hydrolysates from tuna head on the survival and growth of Penaeus vannamei. To this end, a feeding trial was performed on eleven groups of shrimps of average weight 4.34 g. Every group was distributed into three tanks (30 shrimps per tank of 150 L) and was fed with one of the following eleven diets, all of them containing 40% crude protein: one diet containing tuna head meal as the principal protein source, which was used as control diet; nine diets formulated by replacing 50% tuna head meal by fish protein hydrolysates (FPH), and finally one commercial diet chosen as a reference. FPH were obtained by hydrolysis of tuna head during 2, 3 or 6 h and ulterior centrifugation in order...
Tipo: Text Palavras-chave: Tuna; Head; Fish protein hydrolysates; Growth of shrimp.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00064/17517/15138.pdf
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Effect of pelagic longline bait type on species selectivity: a global synthesis of evidence ArchiMer
Gilman, Eric; Chaloupka, Milani; Bach, Pascal; Fennell, Hannah; Hall, Martin; Musyl, Michael; Piovano, Susanna; Poisson, Francois; Song, Liming.
Fisheries can profoundly affect bycatch species with ‘slow’ life history traits. Managing bait type offers one tool to control species selectivity. Different species and sizes of marine predators have different prey, and hence bait, preferences. This preference is a function of a bait’s chemical, visual, acoustic and textural characteristics and size, and for seabirds the effect on hook sink rate is also important. We conducted a global meta-analysis of existing estimates of the relative risk of capture on different pelagic longline baits. We applied a Bayesian random effects meta-analytic regression modelling approach to estimate overall expected bait-specific catch rates. For blue shark and marine turtles, there were 34% (95% HDI: 4–59%) and 60% (95%...
Tipo: Text Palavras-chave: Bait; Bycatch; Longline; Mitigation; Selectivity; Tuna.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00643/75536/76441.pdf
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Enzymatic Hydrolysis of Yellowfin Tuna (Thunnus albacares) By-Products Using Protamex Protease ArchiMer
Nguyen, Thi-my-huong; Sylla, Khalifa Serigne Babacar; Randriamahatody, Zo; Donnay-moreno, Claire; Moreau, Jacques; Luyen Thi Tran,; Berge, Jean-pascal.
Long-term proteolysis of tuna by-products (head, viscera and tail) by the wide spectrum protease Protamex has been investigated and compared. After hydrolysis, two fractions (soluble aqueous phase and insoluble sludge) were collected. Chemical compositions of each fraction and molecular mass distributions of soluble peptides were determined. Degrees of hydrolysis obtained after 12 h of hydrolysis of head, viscera and tail were 32.3, 16.8 and 22.2 %, respectively. Nitrogen recovery in the soluble fractions was 73.6 % for the head, 82.7 % for the viscera and 85.8 % for the tail. Lipid distribution indicated that the majority of lipids remained in the sludge. Such proteolysis appears useful for the production of very different fractions: one rich in peptides...
Tipo: Text Palavras-chave: Tuna; By-products; Proteolysis; Nitrogen recovery; Fish protein hydrolysates.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00030/14142/14042.pdf
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Espèces de thonidés d'intérêt potentiel pour l'aquaculture en Méditerranée ArchiMer
Le Gall, Jean-yves.
Bluefin tuna is particularly concerned in the project of tuna rearing in the Mediterranean sea. However there are no reasons to neglect the other tuna species of the Mediterranean sea which present an interesting material for the development of the research on tuna cultivation.
Tipo: Text Palavras-chave: Thon; Aquaculture; Méditerranée; Tuna; Mariculture; Mediterranea.
Ano: 1979 URL: http://archimer.ifremer.fr/doc/00342/45326/44787.pdf
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Factores Bióticos y Concentración de Ácido Carmínico en la Cochinilla (Dactylopius coccus Costa) (Homoptera: Dactylopiidae) Agricultura Técnica
Rodríguez,Luis C; Faúndez,Eric; Seymour,Judith; Escobar,Carlos A; Espinoza,Luis; Petroutsa,Maria; Ayres,Alejandro; Niemeyer,Hermann  M.
La cochinilla, Dactylopius coccus Costa (Homoptera: Dactylopiidae), es un insecto que crece sobre la tuna, Opuntia ficus-indica (L.) Mill. (Cactaceae), y es explotado por su capacidad para producir colorantes naturales basados en el ácido carmínico. La cochinilla fue introducida a Chile en 1989. Las exportaciones de cochinilla seca se iniciaron en 1994 y los volúmenes y montos se elevaron de manera significativa año a año, hasta alcanzar a cubrir más del 15% de la demanda mundial. Sin embargo, el precio actual de la cochinilla se acerca a los costos de producción, siendo necesario aumentar los rendimientos sin aumentar los costos. En este trabajo se describe el efecto de diversas variables bióticas sobre la concentración de ácido carmínico (CAC), la que...
Tipo: Journal article Palavras-chave: Cochinilla; Ácido carmínico; Colorantes naturales; Tuna; Haplodiploidía; Mejoramiento genético de insectos.
Ano: 2005 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0365-28072005000300011
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Factors that determine the quality of bigeye tuna, caught in the western tropical Atlantic Ocean Arq. Bras. Med. Vet. Zootec.
Nóbrega,C.C.; Mendes,P.P.; Mendes,E.S..
Tuna are highly prized in Oriental cuisine, and the bigeye tuna (Thunnus obesus) is of great commercial importance. Quality is assessed by the tuna meat quality, freshness, texture and fat, which can be altered by factors inherent to capture, such as days of onboard storage, months of the year, whether the catch was living or dead, fish weight and year. These factors were correlated to identify those that affect quality. We obtained data from nine vessels, from January 2007 to April 2010, creating an information bank of 21,908 bigeye tuna. Fish quality and parameters were related using multiple linear regression analysis, in which the variables were included in the model by a stepwise procedure (F>4). We found that live catch, heavier fish and fewer...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Fishing; Thunnus obesus; Tuna; Sensory analysis.
Ano: 2014 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0102-09352014000300949
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Feeding partitioning among tuna taken in surface and mid-water layers: the case of yellowfin (Thunnus albacares) and bigeye (T. obesus) in the Western Tropical Indian Ocean OceanDocs
Sabatié, R.; Marsac, F.; Hallier, J.P.; Potier, M.; Lucas, V.; Ménard, F..
The trophic relations of two apex predators, yellowfin and bigeye tuna (Thunnus albacares and T. obesus), and their prey were investigated in the western tropical Indian Ocean. The contents of 173 non-empty stomachs were analysed from specimens caught with longlines and purse seine during scientific and fishing cruises. Diet data were processed by occurrence, by number, and by wet weight and a comparison of diets between surface and deep swimmers made. Crustaceans were the almost exclusive food source of surface-swimming bigeye tuna, with the stomatopod (Natosquilla investigatoris) being the sole prey item recorded in this category. The diet of deep-swimming yellowfin tuna was balanced between epipelagic fish, crustaceans and cephalopods. Bigeye tuna fed...
Tipo: Journal Contribution Palavras-chave: ANALYSIS; Diets; Tuna fisheries; Analysis; Tuna; Fisheries; Http://aims.fao.org/aos/agrovoc/c_8003; Http://aims.fao.org/aos/agrovoc/c_2934.
Ano: 2004 URL: http://hdl.handle.net/1834/1091
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Fish aggregation device (FAD) research: gaps in current knowledge and future directions for ecological studies ArchiMer
Dempster, Tim; Taquet, Marc.
We reviewed the literature concerning fish aggregation devices (FADs) to determine areas of relative research deficiency. Using specific searches of the Aquatic Sciences and Fisheries Abstracts ( ASFA) database from 1978 to December 2003 and a classical search of the pre-1978 literature, we collected 407 references on FADs. Publications before 1980 were predominantly peer-reviewed, although non-peer reviewed literature has dominated since 1980, due to the numerous technical reports produced as FADs became more widely used in artisinal and large-scale industrial. sheries in the 1980s. Most studies of the ecology of FAD-associated fish were descriptive, with few mensurative experimental studies and even fewer manipulative experimental studies that tested...
Tipo: Text Palavras-chave: Tuna; Pelagic fish; Literature review; FAD; Fish Aggregation Device; Association.
Ano: 2004 URL: https://archimer.ifremer.fr/doc/2004/publication-721.pdf
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Gene expression pattern of digestive and antioxidant enzymes during the larval development of reared Atlantic bluefin tuna (ABFT), Thunnus thynnus L. ArchiMer
Mazurais, David; Coves, Denis; Papandroulakis, Nikos; Ortega, Aurelio; Desbruyeres, Elisabeth; Huelvan, Christine; Le Gall, Marie-madeleine; De La Gandara, Fernando; Cahu, Chantal.
The aim of this study was to determine whether mortality observed during the larval development of reared bluefin tuna (Thunnus thynnus) could be related to improper expression profiles of key genes involved in digestive or antioxidant response capabilities. Tuna larvae were sampled at hatching, 2, 5, 10, 15 and 20 dph (days post hatching) for the relative quantification of transcripts encoded by genes involved in digestive [trypsinogen 1 (TRYP1), alpha-amylase (AMY), aminopeptidase N (ANPEP)] and antioxidant [catalase (CAT)] functions. The levels of expression of ANPEP related to the development and maturation of intestinal function increased from 5 to 20 dph. Furthermore, AMY and TRYP1 genes, which are pancreatic enzymes implicated in carbohydrate and...
Tipo: Text Palavras-chave: Tuna; Gene; Expression; Development; Digestion; Antioxidant.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00171/28264/26521.pdf
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Impact of increasing deployment of artificial floating objects on the spatial distribution of social fish species ArchiMer
Sempo, Gregory; Dagorn, Laurent; Robert, Marianne; Deneubourg, Jean-louis.
1. Approximately 300 pelagic fish species naturally aggregate around floating objects (FOBs) at the surface of the oceans. Currently, more than 50% of the world catch of tropical tuna comes from the industrial tuna fisheries around drifting FOBs. Greater understanding of the complex decision-making processes leading to this aggregation pattern and the impact of the massive release of artificial FOBs by fishermen on the spatial distribution and management of tuna is needed. 2. We analyse how the interplay between social (relationships between individuals) and non-social (responses to the environment) behaviours may affect the spatial distribution of a population in a multi-FOB environment. Taking the example of tropical tunas associating with FOBs and using...
Tipo: Text Palavras-chave: Behaviour-based modelling; Bycatch; FAD; FOB; Sustainable fishery; Tuna.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00151/26275/24439.pdf
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Joint use of echosounding, fishing and video techniques to assess the structure of fish aggregations around moored Fish Aggregating Devices in Martinique (Lesser Antilles) ArchiMer
Doray, Mathieu; Josse, E; Gervain, P; Reynal, Lionel; Chantrel, Josselin.
From April 2003 to April 2004 monthly sea surveys were conducted around 2 fish aggregating devices (FADs) moored at 2000 and 2500 m depth in Martinique (Lesser Antilles). The use of a dual frequency splitbeam echosounder combined with an underwater camera and fishing methods allowed assessment of average space and time distribution of pelagic fish aggregated beneath the FADs, as well as identification of their overall size and species composition. At daytime, 4 fish aggregations were identified at each FAD, representing 4 distinct types: i) an aggregation of small juvenile tuna (mean fork length, FL: 30 cm) observed very close to the surface in 25% of daytime periods; ii) a small surface aggregation dominated by carangids, Caranx crysos, present in 65% of...
Tipo: Text Palavras-chave: Lesser Antilles; Tuna; Aggregative behaviour; Small scale fishery; Underwater video; Acoustics; Fish aggregating device.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3634.pdf
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L'agrégation de thons de sub-surface au sein du système [DCP ancré - macronecton - environnement - pêche] en Martinique : étude hiérarchique par méthodes acoustiques, optiques et halieutiques ArchiMer
Doray, Mathieu.
Artificial Fish Aggregating Devices (FADs) are known to concentrate tropical tunas. This aggregative behaviour drastically increases the vulnerability of these species to fishing. Alternatively, FADs can be used as oceanic observatories to study the aggregative behaviour of large pelagic fish. We conducted sea surveys in Martinique (Lesser Antilles) to i) establish a typology of the pelagic fish aggregations found around moored FADs ii) study their relations with their biotic and abiotic environment and the local fishery. The mean biomass of large pelagic fish aggregations was also estimated to provide scientific inputs to achieve a sustainable management of the moored FAD fishery. The first part presents the background of the study. We introduce the...
Tipo: Text Palavras-chave: Martinique; Lesser Antilles; Hierarchy; Advection diffusion models; Geostatistics; Micronekton; Tuna/environment relationships; Aggregative behaviour; Tuna; Underwater video; Echosounding; FAD; Martinique; Petites Antilles; Hiérarchie; Modèles d'advection diffusion; Géostatistique; Micronecton; Relation thon/environnement; Comportement agrégatif; Thon; Vidéo sous marine; Acoustique; DCP.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/these-1735.pdf
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